The loss of Bedore did hurt. McClinton was owning our interior OL, it only got worse when Viers was in there (for instance, on the drive where we successfully kicked a FG. the run on 3rd and 3 that got stuffed was all McClinton). IIRC, the run that JJ scored on (it was 2nd and 1 I think) McClinton wasn't in there, ku had their pass rush DL in there.
I think for running the ball, we need to focus on more traps and counters instead of stretch plays...use angles and agility instead of physicality because we're getting beat upfront.